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Molecular Modeling of the Interaction Between Stem Cell Peptide and Immune Receptor in Plants.

Department of Life and Environmental Sciences, College of Natural and Health Sciences, Zayed University, Abu Dhabi, UAE. Department of Bioinformatics, Biocenter, University of Wuerzburg, Wuerzburg, Germany. Department of Bioinformatics, Biocenter, University of Wuerzburg, Wuerzburg, Germany. dandekar@biozentrum.uni-wuerzburg.de.

Methods in molecular biology (Clifton, N.J.). 2020;:67-77
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Abstract

Molecular docking enables comprehensive exploration of interactions between chemical moieties and proteins. Modeling and docking approaches are useful to determine the three-dimensional (3D) structure of experimentally uncrystallized proteins and subsequently their interactions with various inhibitors and activators or peptides. Here, we describe a protocol for carrying out molecular modeling and docking of stem cell peptide CLV3p on plant innate immune receptor FLS2.