-
1.
The carbonate concentration mechanism of Pyropia yezoensis (Rhodophyta): evidence from transcriptomics and biochemical data.
Zhang, B, Xie, X, Liu, X, He, L, Sun, Y, Wang, G
BMC plant biology. 2020;(1):424
Abstract
BACKGROUND Pyropia yezoensis (Rhodophyta) is widely cultivated in East Asia and plays important economic, ecological and research roles. Although inorganic carbon utilization of P. yezoensis has been investigated from a physiological aspect, the carbon concentration mechanism (CCM) of P. yezoensis remains unclear. To explore the CCM of P. yezoensis, especially during its different life stages, we tracked changes in the transcriptome, photosynthetic efficiency and in key enzyme activities under different inorganic carbon concentrations. RESULTS Photosynthetic efficiency demonstrated that sporophytes were more sensitive to low carbon (LC) than gametophytes, with increased photosynthesis rate during both life stages under high carbon (HC) compared to normal carbon (NC) conditions. The amount of starch and number of plastoglobuli in cells corresponded with the growth reaction to different inorganic carbon (Ci) concentrations. We constructed 18 cDNA libraries from 18 samples (three biological replicates per Ci treatment at two life cycles stages) and sequenced these using the Illumina platform. De novo assembly generated 182,564 unigenes, including approximately 275 unigenes related to CCM. Most genes encoding internal carbonic anhydrase (CA) and bicarbonate transporters involved in the biophysical CCM pathway were induced under LC in comparison with NC, with transcript abundance of some PyCAs in gametophytes typically higher than that in sporophytes. We identified all key genes participating in the C4 pathway and showed that their RNA abundances changed with varying Ci conditions. High decarboxylating activity of PEPCKase and low PEPCase activity were observed in P. yezoensis. Activities of other key enzymes involved in the C4-like pathway were higher under HC than under the other two conditions. Pyruvate carboxylase (PYC) showed higher carboxylation activity than PEPC under these Ci conditions. Isocitrate lyase (ICL) showed high activity, but the activity of malate synthase (MS) was very low. CONCLUSION We elucidated the CCM of P. yezoensis from transcriptome and enzyme activity levels. All results indicated at least two types of CCM in P. yezoensis, one involving CA and an anion exchanger (transporter), and a second, C4-like pathway belonging to the PEPCK subtype. PYC may play the main carboxylation role in this C4-like pathway, which functions in both the sporophyte and gametophyte life cycles.
-
2.
Rapid On-Site Phenotyping via Field Fluorimeter Detects Differences in Photosynthetic Performance in a Hybrid-Parent Barley Germplasm Set.
Fernández-Calleja, M, Monteagudo, A, Casas, AM, Boutin, C, Pin, PA, Morales, F, Igartua, E
Sensors (Basel, Switzerland). 2020;(5)
Abstract
Crop productivity can be expressed as the product of the amount of radiation intercepted, radiation use efficiency and harvest index. Genetic variation for components of radiation use efficiency has rarely been explored due to the lack of appropriate equipment to determine parameters at the scale needed in plant breeding. On the other hand, responses of the photosynthetic apparatus to environmental conditions have not been extensively investigated under field conditions, due to the challenges posed by the fluctuating environmental conditions. This study applies a rapid, low-cost, and reliable high-throughput phenotyping tool to explore genotypic variation for photosynthetic performance of a set of hybrid barleys and their parents under mild water-stress and unstressed field conditions. We found differences among the genotypic sets that are relevant for plant breeders and geneticists. Hybrids showed lower leaf temperature differential and higher non-photochemical quenching, resembling closer the male parents. The combination of traits detected in hybrids seems favorable, and could indicate improved photoprotection and better fitness under stress conditions. Additionally, we proved the potential of a low-cost, field-based phenotyping equipment to be used routinely in barley breeding programs for early screening for stress tolerance.
-
3.
Regulatory RNA at the crossroads of carbon and nitrogen metabolism in photosynthetic cyanobacteria.
Muro-Pastor, AM, Hess, WR
Biochimica et biophysica acta. Gene regulatory mechanisms. 2020;(1):194477
-
-
Free full text
-
Abstract
Cyanobacteria are photosynthetic bacteria that populate widely different habitats. Accordingly, cyanobacteria exhibit a wide spectrum of lifestyles, physiologies, and morphologies and possess genome sizes and gene numbers which may vary by up to a factor of ten within the phylum. Consequently, large differences exist between individual species in the size and complexity of their regulatory networks. Several non-coding RNAs have been identified that play crucial roles in the acclimation responses of cyanobacteria to changes in the environment. Some of these regulatory RNAs are conserved throughout the cyanobacterial phylum, while others exist only in a few taxa. Here we give an overview on characterized regulatory RNAs in cyanobacteria, with a focus on regulators of photosynthesis, carbon and nitrogen metabolism. However, chances are high that these regulators represent just the tip of the iceberg.
-
4.
Plasticity of photosynthetic processes and the accumulation of secondary metabolites in plants in response to monochromatic light environments: A review.
Landi, M, Zivcak, M, Sytar, O, Brestic, M, Allakhverdiev, SI
Biochimica et biophysica acta. Bioenergetics. 2020;(2):148131
Abstract
Light spectra significantly influence plant metabolism, growth and development. Here, we review the effects of monochromatic blue, red and green light compared to those of multispectral light sources on the morpho-anatomical, photosynthetic and molecular traits of herbaceous plants. Emphasis is given to the effect of light spectra on the accumulation of secondary metabolites, which are important bioactive phytochemicals that determine the nutritional quality of vegetables. Overall, blue light may promote the accumulation of phenylpropanoid-based compounds without substantially affecting plant morpho-anatomical traits compared to the effects of white light. Red light, conversely, strongly alters plant morphology and physiology compared to that under white light without showing a consistent positive effect on secondary metabolism. Due to species-specific effects and the small shifts in the spectral band within the same color that can substantially affect plant growth and metabolism, it is conceivable that monochromatic light significantly affects not only plant photosynthetic performance but also the "quality" of plants by modulating the biosynthesis of photoprotective compounds.
-
5.
pH-Dependent Protonation of Surface Carboxylate Groups in PsbO Enables Local Buffering and Triggers Structural Changes.
Gerland, L, Friedrich, D, Hopf, L, Donovan, EJ, Wallmann, A, Erdmann, N, Diehl, A, Bommer, M, Buzar, K, Ibrahim, M, et al
Chembiochem : a European journal of chemical biology. 2020;(11):1597-1604
-
-
Free full text
-
Abstract
Photosystem II (PSII) catalyzes the splitting of water, releasing protons and dioxygen. Its highly conserved subunit PsbO extends from the oxygen-evolving center (OEC) into the thylakoid lumen and stabilizes the catalytic Mn4 CaO5 cluster. The high degree of conservation of accessible negatively charged surface residues in PsbO suggests additional functions, as local pH buffer or by affecting the flow of protons. For this discussion, we provide an experimental basis, through the determination of pKa values of water-accessible aspartate and glutamate side-chain carboxylate groups by means of NMR. Their distribution is strikingly uneven, with high pKa values around 4.9 clustered on the luminal PsbO side and values below 3.5 on the side facing PSII. pH-dependent changes in backbone chemical shifts in the area of the lumen-exposed loops are observed, indicating conformational changes. In conclusion, we present a site-specific analysis of carboxylate group proton affinities in PsbO, providing a basis for further understanding of proton transport in photosynthesis.
-
6.
Global patterns of the leaf economics spectrum in wetlands.
Pan, Y, Cieraad, E, Armstrong, J, Armstrong, W, Clarkson, BR, Colmer, TD, Pedersen, O, Visser, EJW, Voesenek, LACJ, van Bodegom, PM
Nature communications. 2020;(1):4519
Abstract
The leaf economics spectrum (LES) describes consistent correlations among a variety of leaf traits that reflect a gradient from conservative to acquisitive plant strategies. So far, whether the LES holds in wetland plants at a global scale has been unclear. Using data on 365 wetland species from 151 studies, we find that wetland plants in general show a shift within trait space along the same common slope as observed in non-wetland plants, with lower leaf mass per area, higher leaf nitrogen and phosphorus, faster photosynthetic rates, and shorter leaf life span compared to non-wetland plants. We conclude that wetland plants tend to cluster at the acquisitive end of the LES. The presented global quantifications of the LES in wetland plants enhance our understanding of wetland plant strategies in terms of resources acquisition and allocation, and provide a stepping-stone to developing trait-based approaches for wetland ecology.
-
7.
Mesophyll conductance in land surface models: effects on photosynthesis and transpiration.
Knauer, J, Zaehle, S, De Kauwe, MG, Haverd, V, Reichstein, M, Sun, Y
The Plant journal : for cell and molecular biology. 2020;(4):858-873
-
-
Free full text
-
Abstract
The CO2 transfer conductance within plant leaves (mesophyll conductance, gm ) is currently not considered explicitly in most land surface models (LSMs), but instead treated implicitly as an intrinsic property of the photosynthetic machinery. Here, we review approaches to overcome this model deficiency by explicitly accounting for gm , which comprises the re-adjustment of photosynthetic parameters and a model describing the variation of gm in dependence of environmental conditions. An explicit representation of gm causes changes in the response of photosynthesis to environmental factors, foremost leaf temperature, and ambient CO2 concentration, which are most pronounced when gm is small. These changes in leaf-level photosynthesis translate into a stronger climate and CO2 response of gross primary productivity (GPP) and transpiration at the global scale. The results from two independent studies show consistent latitudinal patterns of these effects with biggest differences in GPP in the boreal zone (up to ~15%). Transpiration and evapotranspiration show spatially similar, but attenuated, changes compared with GPP. These changes are indirect effects of gm caused by the assumed strong coupling between stomatal conductance and photosynthesis in current LSMs. Key uncertainties in these simulations are the variation of gm with light and the robustness of its temperature response across plant types and growth conditions. Future research activities focusing on the response of gm to environmental factors and its relation to other plant traits have the potential to improve the representation of photosynthesis in LSMs and to better understand its present and future role in the Earth system.
-
8.
Arabidopsis thaliana branching enzyme 1 is essential for amylopectin biosynthesis and cesium tolerance.
Zhang, J, Yang, J, Zhang, T, Yang, Q, Gao, H, Cheng, H, Jin, H, Wang, Y, Qi, Z
Journal of plant physiology. 2020;:153208
Abstract
Arabidopsis thaliana BRANCHING ENZYME 1 (AtBE1) is a chloroplast-localized embryo-lethal gene previously identified in knockout mutants. AtBE1 is thought to function in carbohydrate metabolism; however, this has not been experimentally demonstrated. Chlorosis is a typical symptom of cesium (Cs) toxicity in plants. The genetic target of Cs toxicity is largely unknown. Here, we isolated a Cs+-tolerant and chlorophyll-defective Arabidopsis ethyl methanesulfonate (EMS) mutant, atbe1-5. Mapping by sequencing and genetic complementation confirmed that a single amino acid change (P749S) in a random coil motif of AtBE1 confers the mutant's Cs+-tolerant and chlorophyll-defective phenotype. An isothermal titration calorimetry assay determined that the 749th residue is the Cs+-binding site and hence likely the target of Cs+ toxicity. We hypothesized that binding of Cs+ to the 749th residue of AtBE1 inhibits the enzyme's activity and confers Cs+ toxicity, which in turn reduces photosynthetic efficiency. In support with this hypothesis, atbe1-5 leaves have a reduced photosynthetic efficiency, and their amylose and amylopectin contents are ∼60 % and ∼1%, respectively, of those in Col-0 ecotype leaves. Leaves of the mutant have a lower sucrose, but higher maltose, concentration than those of Col-0. This study demonstrated that AtBE1 is an essential gene for amylopectin and amylose biosynthesis, as well as the target of Cs+ toxicity; therefore, it can serve as a genetic locus for engineering plants to extract Cs+ from contaminated soil while maintaining growth.
-
9.
Temperature-dependent regulation of electron transport and ATP synthesis in chloroplasts in vitro and in silico.
Tikhonov, AN, Vershubskii, AV
Photosynthesis research. 2020;(1-3):299-329
Abstract
The significance of temperature-dependent regulation of photosynthetic apparatus (PSA) is determined by the fact that plant temperature changes with environmental temperature. In this work, we present a brief overview of temperature-dependent regulation of photosynthetic processes in class B chloroplasts (thylakoids) and analyze these processes using a computer model that takes into account the key stages of electron and proton transport coupled to ATP synthesis. The rate constants of partial reactions were parametrized on the basis of experimental temperature dependences of partial photosynthetic processes: (1) photosystem II (PSII) turnover and plastoquinone (PQ) reduction, (2) the plastoquinol (PQH2) oxidation by the cytochrome (Cyt) b6f complex, (3) the ATP synthase activity, and (4) the proton leak from the thylakoid lumen. We consider that PQH2 oxidation is the rate-limiting step in the intersystem electron transport. The parametrization of the rate constants of these processes is based on earlier experimental data demonstrating strong correlations between the functional and structural properties of thylakoid membranes that were probed with the lipid-soluble spin labels embedded into the membranes. Within the framework of our model, we could adequately describe a number of experimental temperature dependences of photosynthetic reactions in thylakoids. Computer modeling of electron and proton transport coupled to ATP synthesis supports the notion that PQH2 oxidation by the Cyt b6f complex and proton pumping into the lumen are the basic temperature-dependent processes that determine the overall electron flux from PSII to molecular oxygen and the net ATP synthesis upon variations of temperature. The model describes two branches of the temperature dependence of the post-illumination reduction of [Formula: see text] characterized by different activation energies (about 60 and ≤ 3.5 kJ mol-1). The model predicts the bell-like temperature dependence of ATP formation, which arises from the balance of several factors: (1) the thermo-induced acceleration of electron transport through the Cyt b6f complex, (2) deactivation of PSII photochemistry at sufficiently high temperatures, and (3) acceleration of the passive proton outflow from the thylakoid lumen bypassing the ATP synthase complex. The model describes the temperature dependence of experimentally measured parameter P/2e, determined as the ratio between the rates of ATP synthesis and pseudocyclic electron transport (H2O → PSII → PSI → O2).
-
10.
Regulatory thiol oxidation in chloroplast metabolism, oxidative stress response and environmental signaling in plants.
Vogelsang, L, Dietz, KJ
The Biochemical journal. 2020;(10):1865-1878
Abstract
The antagonism between thiol oxidation and reduction enables efficient control of protein function and is used as central mechanism in cellular regulation. The best-studied mechanism is the dithiol-disulfide transition in the Calvin Benson Cycle in photosynthesis, including mixed disulfide formation by glutathionylation. The adjustment of the proper thiol redox state is a fundamental property of all cellular compartments. The glutathione redox potential of the cytosol, stroma, matrix and nucleoplasm usually ranges between -300 and -320 mV. Thiol reduction proceeds by short electron transfer cascades consisting of redox input elements and redox transmitters such as thioredoxins. Thiol oxidation ultimately is linked to reactive oxygen species (ROS) and reactive nitrogen species (RNS). Enhanced ROS production under stress shifts the redox network to more positive redox potentials. ROS do not react randomly but primarily with few specific redox sensors in the cell. The most commonly encountered reaction within the redox regulatory network however is the disulfide swapping. The thiol oxidation dynamics also involves transnitrosylation. This review compiles present knowledge on this network and its central role in sensing environmental cues with focus on chloroplast metabolism.