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1.
What Do We Know About the Publications Related with Azospirillum? A Metadata Analysis.
Cassán, F, López, G, Nievas, S, Coniglio, A, Torres, D, Donadio, F, Molina, R, Mora, V
Microbial ecology. 2021;(1):278-281
Abstract
Azospirillum is one of the most successful plant growth-promoting bacteria (PGPB) genera and it is considered a study model for plant-bacteria interactions. Because of that, a wide broad of topics has been boarded and discussed in a significant number of publications in the last four decades. Using the Scopus® database, we conducted a bibliographic search in order to analyze the number and type of publications, the authors responsible of these contributions, and the origin of the researchers, as well as the keywords and journals selected by the authors, among other related characteristics, with the aim to understand some less addressed details about the work done with Azospirillum worldwide since its discovery in 1925. Despite that the largest numbers of publications about this bacterium were obtained between the 1970 and 1980s, there is still a linear increase tendency in the number of published works. Understanding the mechanisms involved in the ability of these bacteria to promote growth in a wide broad of plant species under both laboratory and field conditions has been a preferential target for these published articles. This tendency could be considered a cause or consequence of the current increase in the number of commercial products formulated with Azospirillum around the world and a catalyzer for the increase of published articles along time.
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2.
Mycorrhizal types differ in ecophysiology and alter plant nutrition and soil processes.
Tedersoo, L, Bahram, M
Biological reviews of the Cambridge Philosophical Society. 2019;(5):1857-1880
Abstract
Mycorrhizal fungi benefit plants by improved mineral nutrition and protection against stress, yet information about fundamental differences among mycorrhizal types in fungi and trees and their relative importance in biogeochemical processes is only beginning to accumulate. We critically review and synthesize the ecophysiological differences in ectomycorrhizal, ericoid mycorrhizal and arbuscular mycorrhizal symbioses and the effect of these mycorrhizal types on soil processes from local to global scales. We demonstrate that guilds of mycorrhizal fungi display substantial differences in genome-encoded capacity for mineral nutrition, particularly acquisition of nitrogen and phosphorus from organic material. Mycorrhizal associations alter the trade-off between allocation to roots or mycelium, ecophysiological traits such as root exudation, weathering, enzyme production, plant protection, and community assembly as well as response to climate change. Mycorrhizal types exhibit differential effects on ecosystem carbon and nutrient cycling that affect global elemental fluxes and may mediate biome shifts in response to global change. We also note that most studies performed to date have not been properly replicated and collectively suffer from strong geographical sampling bias towards temperate biomes. We advocate that combining carefully replicated field experiments and controlled laboratory experiments with isotope labelling and -omics techniques offers great promise towards understanding differences in ecophysiology and ecosystem services among mycorrhizal types.
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3.
Root and shoot competition lead to contrasting competitive outcomes under water stress: A systematic review and meta-analysis.
Foxx, AJ, Fort, F
PloS one. 2019;(12):e0220674
Abstract
BACKGROUND Competition is a critical process that shapes plant communities and interacts with environmental constraints. There are surprising knowledge gaps related to mechanisms that belie competitive processes, though important to natural communities and agricultural systems: the contribution of different plant parts on competitive outcomes and the effect of environmental constraints on these outcomes. OBJECTIVE Studies that partition competition into root-only and shoot-only interactions assess whether plant parts impose different competitive intensities using physical partitions and serve as an important way to fill knowledge gaps. Given predicted drought escalation due to climate change, we focused a systematic review-including a meta-analysis on the effects of water supply and competitive outcomes. METHODS We searched ISI Web of Science for peer-reviewed studies and found 2042 results. From which eleven suitable studies, five of which had extractable information of 80 effect sizes on 10 species to test these effects. We used a meta-analysis to compare the log response ratios (lnRR) on biomass for responses to competition between roots, shoots, and full plants at two water levels. RESULTS Water availability treatment and competition treatment (root-only, shoot-only, and full plant competition) significantly interacted to affect plant growth responses (p < 0.0001). Root-only and full plant competition are more intense in low water availability (-1.2 and -0.9 mean lnRR, respectively) conditions than shoot-only competition (-0.2 mean lnRR). However, shoot-only competition in high water availability was the most intense (- 0.78 mean lnRR) compared to root-only and full competition (-0.5 and 0.61 mean lnRR, respectively) showing the opposite pattern to low water availability. These results also show that the intensity of full competition is similar to root-only competition and that low water availability intensifies root competition while weakening shoot competition. CONCLUSIONS The outcome that competition is most intense between roots at low water availability emphasizes the importance of root competition and these patterns of competition may shift in a changing climate, creating further urgency for further studies to fil knowledge gaps addressing issues of drought on plant interactions and communities.
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4.
Influence of fungal endophytes on plant physiology is more pronounced under stress than well-watered conditions: a meta-analysis.
Dastogeer, KMG
Planta. 2018;(6):1403-1416
Abstract
A meta-analysis of published articles shows that the influence of fungal endophytes on plant performance is dependent on plant water status. The magnitude of endophytic effects is higher in plants grown in water-limiting environments than those in adequate watering environments. The outcome of plant-endophyte interactions depends on the identity of the plant host and fungal symbionts. Water limitation often hinders plant productivity in both natural and agricultural settings. Endophytic fungal symbionts can mediate plant water stress responses by enhancing drought tolerance and avoidance, but these effects have not been quantified across plant-endophyte studies. A meta-analysis of published studies was performed to determine how endophytic fungal symbionts influence plant response under non-stressed versus water-stressed conditions. A significantly positive or neutral overall effect of fungal endophyte was noted under water-stressed conditions. In contrast, under non-stressed conditions, the overall effect of fungi on plants was mostly neutral. In general, the presence of fungal endophytes increased plant's total biomass, chlorophyll content, and stomatal conductance irrespective of water availability. In addition, plant shoot biomass, tiller density, plant height, maximum quantum yield (Fv/Fm), net photosynthesis, relative water content (RWC), amounts of ascorbate peroxidase (APX), glutathione (GSH), polyphenol oxidase (PPO), superoxide dismutase (SOD), and phenolics were significantly increased by endophyte colonisation under stressed conditions. Malondialdehyde (MDA) and hydrogen peroxide (H2O2) were reduced in endophytic plants under stress as compared with non-endophytic counterparts. Categorical analysis revealed that accumulation in plant biomass is influenced by factors such as host and fungi identity, the magnitude of which is greater under stressed than non-stressed conditions.
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5.
Green leaf volatile production by plants: a meta-analysis.
Ameye, M, Allmann, S, Verwaeren, J, Smagghe, G, Haesaert, G, Schuurink, RC, Audenaert, K
The New phytologist. 2018;(3):666-683
Abstract
666 I. Introduction 667 II. Biosynthesis 667 III. Meta-analysis 669 IV. The type of stress influences the total amount of GLVs released 669 V. Herbivores can modulate the wound-induced release of GLVs 669 VI. Fungal infection greatly induces GLV production 672 VII. Monocots and eudicots respond differentially to different types of stress 673 VIII. The type of stress does not influence the proportion of GLVs per chemical class 673 IX. The type of stress does influence the isomeric ratio within each chemical class 674 X. GLVs: from signal perception to signal transduction 676 XI. GLVs influence the C/N metabolism 677 XII. Interaction with plant hormones 678 XIII. General conclusions and unanswered questions 678 Acknowledgements 679 References 679 SUMMARY Plants respond to stress by releasing biogenic volatile organic compounds (BVOCs). Green leaf volatiles (GLVs), which are abundantly produced across the plant kingdom, comprise an important group within the BVOCs. They can repel or attract herbivores and their natural enemies; and they can induce plant defences or prime plants for enhanced defence against herbivores and pathogens and can have direct toxic effects on bacteria and fungi. Unlike other volatiles, GLVs are released almost instantly upon mechanical damage and (a)biotic stress and could thus function as an immediate and informative signal for many organisms in the plant's environment. We used a meta-analysis approach in which data from the literature on GLV production during biotic stress responses were compiled and interpreted. We identified that different types of attackers and feeding styles add a degree of complexity to the amount of emitted GLVs, compared with wounding alone. This meta-analysis illustrates that there is less variation in the GLV profile than we presumed, that pathogens induce more GLVs than insects and wounding, and that there are clear differences in GLV emission between monocots and dicots. Besides the meta-analysis, this review provides an update on recent insights into the perception and signalling of GLVs in plants.
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6.
Beyond nutrients: a meta-analysis of the diverse effects of arbuscular mycorrhizal fungi on plants and soils.
Delavaux, CS, Smith-Ramesh, LM, Kuebbing, SE
Ecology. 2017;(8):2111-2119
Abstract
Arbuscular mycorrhizal fungi (AMF) can increase plant fitness under certain environmental conditions. Among the mechanisms that may drive this mutualism, the most studied is provisioning of nutrients by AMF in exchange for carbon from plant hosts. However, AMF may also provide a suite of non-nutritional benefits to plants including improved water uptake, disease resistance, plant chemical defense, soil aggregation, and allelochemical transport and protection. Here, we use a meta-analysis of 93 studies to assess the relative effect of AMF on nutritional and non-nutritional factors that may influence plant fitness. We find that the positive effects of AMF on soil aggregation, water flow and disease resistance are equal to the effect of AMF on plant nitrogen and phosphorus uptake. However, AMF had no effect on the uptake of other nutrients, plant water content, allelopathic transport or production of chemical defense compounds. We suggest future research directions, including experimentally assessing the relative contribution on plant fitness of AMF interactions by untangling the independence of alternative benefits of AMF from an increase in nutrient uptake. This will lead to a more holistic view of the mycorrhizal-plant association and a more accurate picture of the net impact on the plant or plant community in question.
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7.
Fine root endophytes under scrutiny: a review of the literature on arbuscule-producing fungi recently suggested to belong to the Mucoromycotina.
Orchard, S, Standish, RJ, Dickie, IA, Renton, M, Walker, C, Moot, D, Ryan, MH
Mycorrhiza. 2017;(7):619-638
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Abstract
Fine root endophytes (FRE) are arbuscule-forming fungi presently considered as a single species-Glomus tenue in the Glomeromycota (Glomeromycotina)-but probably belong within the Mucoromycotina. Thus, FRE are the only known arbuscule-forming fungi not within the arbuscular mycorrhizal fungi (AMF; Glomeromycotina) as currently understood. Phylogenetic differences between FRE and AMF could reflect ecological differences. To synthesize current ecological knowledge, we reviewed the literature on FRE and identified 108 papers that noted the presence of FRE and, in some, the colonization levels for FRE or AMF (or both). We categorized these records by geographic region, host-plant family and environment (agriculture, moderate-natural, low-temperature, high-altitude and other) and determined their influence on the percentage of root length colonized by FRE in a meta-analysis. We found that FRE are globally distributed, with many observations from Poaceae, perhaps due to grasses being widely distributed. In agricultural environments, colonization by FRE often equalled or exceeded that of AMF, particularly in Australasia. In moderate-natural and high-altitude environments, average colonization by FRE (~10%) was lower than that of AMF (~35%), whereas in low-temperature environments, colonization was similar (~20%). Several studies suggested that FRE can enhance host-plant phosphorus uptake and growth, and may be more resilient than AMF to environmental stress in some host plants. Further research is required on the functioning of FRE in relation to the environment, host plant and co-occurring AMF and, in particular, to examine whether FRE are important for plant growth in stressful environments. Targeted molecular primers are urgently needed for further research on FRE.
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Meta-Analysis of the Detection of Plant Pigment Concentrations Using Hyperspectral Remotely Sensed Data.
Huang, J, Wei, C, Zhang, Y, Blackburn, GA, Wang, X, Wei, C, Wang, J
PloS one. 2015;(9):e0137029
Abstract
Passive optical hyperspectral remote sensing of plant pigments offers potential for understanding plant ecophysiological processes across a range of spatial scales. Following a number of decades of research in this field, this paper undertakes a systematic meta-analysis of 85 articles to determine whether passive optical hyperspectral remote sensing techniques are sufficiently well developed to quantify individual plant pigments, which operational solutions are available for wider plant science and the areas which now require greater focus. The findings indicate that predictive relationships are strong for all pigments at the leaf scale but these decrease and become more variable across pigment types at the canopy and landscape scales. At leaf scale it is clear that specific sets of optimal wavelengths can be recommended for operational methodologies: total chlorophyll and chlorophyll a quantification is based on reflectance in the green (550-560nm) and red edge (680-750nm) regions; chlorophyll b on the red, (630-660nm), red edge (670-710nm) and the near-infrared (800-810nm); carotenoids on the 500-580nm region; and anthocyanins on the green (550-560nm), red edge (700-710nm) and near-infrared (780-790nm). For total chlorophyll the optimal wavelengths are valid across canopy and landscape scales and there is some evidence that the same applies for chlorophyll a.
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Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
Shaar-Moshe, L, Hübner, S, Peleg, Z
BMC plant biology. 2015;:111
Abstract
BACKGROUND Drought is the major environmental stress threatening crop-plant productivity worldwide. Identification of new genes and metabolic pathways involved in plant adaptation to progressive drought stress at the reproductive stage is of great interest for agricultural research. RESULTS We developed a novel Cross-Species meta-Analysis of progressive Drought stress at the reproductive stage (CSA:Drought) to identify key drought adaptive genes and mechanisms and to test their evolutionary conservation. Empirically defined filtering criteria were used to facilitate a robust integration of 17 deposited microarray experiments (148 arrays) of Arabidopsis, rice, wheat and barley. By prioritizing consistency over intensity, our approach was able to identify 225 differentially expressed genes shared across studies and taxa. Gene ontology enrichment and pathway analyses classified the shared genes into functional categories involved predominantly in metabolic processes (e.g. amino acid and carbohydrate metabolism), regulatory function (e.g. protein degradation and transcription) and response to stimulus. We further investigated drought related cis-acting elements in the shared gene promoters, and the evolutionary conservation of shared genes. The universal nature of the identified drought-adaptive genes was further validated in a fifth species, Brachypodium distachyon that was not included in the meta-analysis. qPCR analysis of 27, randomly selected, shared orthologs showed similar expression pattern as was found by the CSA:Drought.In accordance, morpho-physiological characterization of progressive drought stress, in B. distachyon, highlighted the key role of osmotic adjustment as evolutionary conserved drought-adaptive mechanism. CONCLUSIONS Our CSA:Drought strategy highlights major drought-adaptive genes and metabolic pathways that were only partially, if at all, reported in the original studies included in the meta-analysis. These genes include a group of unclassified genes that could be involved in novel drought adaptation mechanisms. The identified shared genes can provide a useful resource for subsequent research to better understand the mechanisms involved in drought adaptation across-species and can serve as a potential set of molecular biomarkers for progressive drought experiments.
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10.
Drought effect on plant nitrogen and phosphorus: a meta-analysis.
He, M, Dijkstra, FA
The New phytologist. 2014;(4):924-31
Abstract
Climate change scenarios forecast increased aridity in large areas worldwide with potentially important effects on nutrient availability and plant growth. Plant nitrogen and phosphorus concentrations (plant [N] and [P]) have been used to assess nutrient limitation, but a comprehensive understanding of drought stress on plant [N] and [P] remains elusive. We conducted a meta-analysis to examine responses of plant [N] and [P] to drought manipulation treatments and duration of drought stress. Drought stress showed negative effects on plant [N] (-3.73%) and plant [P] (-9.18%), and a positive effect on plant N:P (+ 6.98%). Drought stress had stronger negative effects on plant [N] and [P] in the short term (< 90 d) than in the long term (> 90 d). Drought treatments that included drying-rewetting cycles showed no effect on plant [N] and [P], while constant, prolonged, or intermittent drought stress had a negative effect on plant [P]. Our results suggest that negative effects on plant [N] and [P] are alleviated with extended duration of drought treatments and with drying-rewetting cycles. Availability of water, rather than of N and P, may be the main driver for reduced plant growth with increased long-term drought stress.